Prof. dr. A.D.J. (Aalt-Jan) van Dijk
Faculteit der Natuurwetenschappen, Wiskunde en Informatica
Swammerdam Institute for Life Sciences
Bezoekadres
- Science Park 904
- Kamernummer: C2.110
Postadres
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Postbus 1212
1000 BE Amsterdam
Contactgegevens
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Profile
Mijn onderzoek richt zich op systeembiologie, modellering en statistische analyse van netwerken, en bio-informatica-analyse van eiwitten en DNA. Daarbij komt vooral veel machine learning kijken, bijvoorbeeld het voorspellen van eigenschappen van enzymen of het voorspellen van interacties tussen eiwitten aan de hand van hun structuren.
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Publicaties
2025
- Avagyan, V., Boer, M. P., Solin, J., van Dijk, A. D. J., Bustos-Korts, D., van Rossum, B. J., Ramakers, J. J. C., van Eeuwijk, F., & Kruijer, W. (2025). Penalized factorial regression as a flexible and computationally attractive reaction norm model for prediction in the presence of GxE. Theoretical and Applied Genetics, 138(4), Article 88. https://doi.org/10.1007/s00122-025-04865-4
- Cheng, X., Yan, Z., Li, Q., Schmitz, L., Yan, J., Ge, Y., Lan, Y., Zhao, Y., Wang, Y., Li, G., Liu, Y., Schneijderberg, M., Yang, L., Bian, H., van Dijk, A. D. J., Qin, L., Cao, Q., & Bisseling, T. (2025). Chinese chestnut did not induce negative plant soil feedback during centuries of growth. Science of the Total Environment, 970, Article 178883. https://doi.org/10.1016/j.scitotenv.2025.178883
Zhang, J., Wang, B., Xu, H., Liu, W., Yu, J., Wang, Q., Yu, H., Wei, J. W., Dai, R., Zhou, J., He, Y., Zou, D., Yang, J., Ban, X., Hu, Q., Meng, X., Liu, Y. X., Wang, B., Hu, B., ... Bai, Y. (2025). Root microbiota regulates tiller number in rice. Cell, 188(12), 3152-3166.e16. https://doi.org/10.1016/j.cell.2025.03.033
2024
- Bellinazzo, F., Nadal Bigas, J., Hogers, R. A. H., Kodde, J., van der Wal, F., Kokkinopoulou, P., Duijts, K. T. M., Angenent, G. C., van Dijk, A. D. J., van Velzen, R., & Immink, R. G. H. (2024). Evolutionary origin and functional investigation of the widely conserved plant PEBP gene STEPMOTHER OF FT AND TFL1 (SMFT). Plant Journal, 120(4), 1410-1420. https://doi.org/10.1111/tpj.17057
- Noordijk, B., Garcia Gomez, M. L., ten Tusscher, K. H. W. J., de Ridder, D., van Dijk, A. D. J., & Smith, R. W. (2024). The rise of scientific machine learning: a perspective on combining mechanistic modelling with machine learning for systems biology. Frontiers in Systems Biology, 4, Article 1407994. https://doi.org/10.3389/fsysb.2024.1407994 [details]
- Sun, W., Zhang, Z., Bonnema, G., Wang, X., & van Dijk, A. D. J. (2024). Gene expression, transcription factor binding and histone modification predict leaf adaxial–abaxial polarity related genes. Horticultural Plant Journal, 10(4), 971-982. https://doi.org/10.1016/j.hpj.2024.06.002 [details]
- Thoris, K., Correa Marrero, M., Fiers, M., Lai, X., Zahn, I. E., Jiang, X., Mekken, M., Busscher, S., Jansma, S., Nanao, M., De Ridder, D., Van Dijk, A. D. J., Angenent, G. C., Immink, R. G. H., Zubieta, C., & Bemer, M. (2024). Uncoupling FRUITFULL's functions through modification of a protein motif identified by co-ortholog analysis. Nucleic Acids Research, 52(21), 13290-13304. https://doi.org/10.1093/nar/gkae963
- van Es, S. W., Muñoz-Gasca, A., Romero-Campero, F. J., González-Grandío, E., de los Reyes, P., Tarancón, C., van Dijk, A. D. J., van Esse, W., Pascual-García, A., Angenent, G. C., Immink, R. G. H., & Cubas, P. (2024). A gene regulatory network critical for axillary bud dormancy directly controlled by Arabidopsis BRANCHED1. New Phytologist, 241(3), 1193-1209. https://doi.org/10.1111/nph.19420
This list of publications is extracted from the UvA-Current Research Information System. Questions? Ask the library or the Pure staff of your faculty / institute. Log in to Pure to edit your publications. Log in to Personal Page Publication Selection tool to manage the visibility of your publications on this list. -
Nevenwerkzaamheden
- Geen nevenwerkzaamheden
Zhang, J., Wang, B., Xu, H., Liu, W., Yu, J., Wang, Q., Yu, H., Wei, J. W., Dai, R., Zhou, J., He, Y., Zou, D., Yang, J., Ban, X., Hu, Q., Meng, X., Liu, Y. X., Wang, B., Hu, B., ... Bai, Y. (2025). Root microbiota regulates tiller number in rice. Cell, 188(12), 3152-3166.e16.